- This season began merely two whole weeks after the first season had ended, on April 19, 2008, with the airing of The Elite Guard, and ended on July 5, 2008, with the two-parter, A Bridge Too Close. The season revolved mainly around the Autobots in the aftermath of Megatron's return, trying to restore the city and their…
- The third season began on March 14, 2009 with the three-part premiere, Transwarped, and ended on May 23, 2009. This season following the events of Transwarped focused on the Autobots' attempt to reach Cybertron in order to warn the Autobot High Council of Shockwave, who has been masquerading as Autobot Intelligence Off…